# Jalview

- **Website:** <https://jalview.org>
- **Primary alias:** `jalview.org`

## Description

Jalview is an open-source bioinformatics project offering tools for editing, visualising and analysing multiple sequence alignments. Its software supports DNA, RNA and protein sequences, with features for exploring molecular structures, annotations, phylogenetic trees and principal components analysis plots. Users can also compare aligned DNA and protein sequences through linked views.

The Jalview Desktop application is available for most operating systems, with downloads, executable packages and source code provided. JalviewJS offers a web-based version with similar capabilities. For structural visualisation, Jalview can work with Jmol, VARNA, Chimera, ChimeraX and PyMOL. It can also discover experimental and predicted protein structures through the 3D-Beacons network and retrieve sequences and alignments from EMBL-EBI databases. The Desktop app provides access to alignment and analysis services through the Java Bioinformatics Analysis Web Services framework.

Jalview provides documentation, FAQs, a discussion forum, training courses, videos and hands-on exercises. Development is coordinated at the University of Dundee, and the project is released under the GPL. It is also recognised by ELIXIR as a biological information resource.

## Industries

- 🧪 Science and Education
- 🧪 Biology _(under Science and Education)_

## Links

- [twitter](https://twitter.com/jalview)
- [youtube](https://youtube.com/channel/UCIjpnvZB770yz7ftbrJ0tfw)
- [linkedin](https://linkedin.com/company/jalview)

## Logos & icons

- logo _(primary)_ — SVG, PNG — [download](https://cdn.brandfetch.io/idDasG24_p/theme/dark/logo.svg?c=1bxid64Mup7aczewSAYMX&t=1791068618231)
- icon _(primary)_ — JPEG — [download](https://cdn.brandfetch.io/idDasG24_p/w/400/h/400/theme/dark/icon.jpeg?c=1bxid64Mup7aczewSAYMX&t=1791068618307)

## Colors

| Name | Hex | Theme |
| --- | --- | --- |
| Deep Cerulean | #0084a9 | accent |
| Redwood | #55190f | dark |
| Rajah | #f7c67b | light |

## Fonts

- latoblack — asset _(custom)_
- -apple-system — asset _(system)_

## Imagery

- banner _(primary)_ — JPEG — [download](https://cdn.brandfetch.io/idDasG24_p/w/1500/h/500/idM7LxqM1Q.jpeg?c=1bxid64Mup7aczewSAYMX&t=1752876594686)

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_Source: <https://brandfetch.com/jalview.org>_
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