SeqAn
@seqan.de
SeqAn is an open source C++ library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data.
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About SeqAn
SeqAn is an innovative open-source C++ library designed for efficient algorithms and data structures tailored for the analysis of biological sequences. Focused on enhancing performance and extensibility, SeqAn simplifies the development of software tools, offering a user-friendly interface that balances usability with minimal performance loss. The library includes a variety of data structures for sequence analysis, such as unified interfaces for string searches and succinct structures for pangenomics.
SeqAn also provides a suite of core algorithms, including pairwise and multiple sequence alignments, approximate string searches, and filtering techniques. With support for modern hardware through SIMD vectorization and multicore processing, SeqAn ensures fast data input and output, essential in handling large sequencing datasets.
In addition to its library, SeqAn collaborates with the Center for Integrative Bioinformatics (CIBI) to offer comprehensive services for sequencing data analysis, including training, maintenance, and support. This makes SeqAn a valuable resource for scientific workflows and applications across various research domains.
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